http://jcps.bjmu.edu.cn

中国药学(英文版) ›› 2022, Vol. 31 ›› Issue (9): 689-697.DOI: 10.5246/jcps.2022.09.058

• 【研究论文】 • 上一篇    下一篇

基于生物信息学分析探讨地塞米松通过上调TNFAIP3减轻烟雾吸入性急性肺损伤炎症反应的机制

赵雅慧#, 赵莉#, 赵娟#, 卢继业, 田薇, 胡金朋, 苏彬, 付立华*(), 郭然*()   

  1. 中国人民武装警察部队特色医学中心, 天津 300162
  • 收稿日期:2022-04-16 修回日期:2022-05-18 接受日期:2022-06-03 出版日期:2022-09-30 发布日期:2022-09-30
  • 通讯作者: 付立华, 郭然
  • 作者简介:
    + Tel.: +86-22-60577070, E-mail:
    + Tel.: +86-22-60578778, E-mail:
  • 基金资助:
    The National Key Research and Development Projects (Grant No. 2017YFC1307602); the Scientific Research Projects of PLA (Grant No. 145BHQ090003076X); Research Project of PAP (Grant No. CWJ18L004); Logistics College of PAP Projects (Grant No. WHJ201721).

Dexamethasone up-regulates TNFAIP3 to attenuate inflammatory response with smoke inhalation-induced acute lung injury based on the GEO database

Yahui Zhao#, Yahui Zhao#, Juan Zhao#, Jiye Lu, Wei Tian, Jinpeng Hu, Bin Su, Lihua Fu*(), Ran Guo*()   

  1. Characteristic Medical Center of PAP, Tianjin 300162, China
  • Received:2022-04-16 Revised:2022-05-18 Accepted:2022-06-03 Online:2022-09-30 Published:2022-09-30
  • Contact: Lihua Fu, Ran Guo
  • About author:
    # Yahui Zhao, Li Zhao and Juan Zhao contributed equally to this work.

摘要:

通过生物信息学基因芯片数据筛选及分析, 结合实验室验证, 探讨地塞米松(dexamethasone, Dex) 对烟雾吸入性急性肺损伤(SI-ALI)小鼠早期炎症反应的影响。通过GEO数据库检索急性肺损伤基因数据集, 经GEO2R处理, 将各数据集的差异基因进行韦恩图分析, 筛选出差异基因。通过String平台构建蛋白质互作网络, 用Cytoscape软件筛选关键蛋白模块; 利用在线数据库DAVID和KOBAS进行GO和KEGG富集分析。45只C57BL/6小鼠随机分为3组: 对照组、烟雾吸入组(smoke组)和烟雾吸入 + 地塞米松组(smoke + Dex组), 每组15只。smoke组、smoke + Dex组吸入烟雾10 min造成SI-ALI, 对照组吸入空气; smoke + Dex组小鼠肌肉注射Dex(0.4 mg/100 g)。24 h后处死动物, 采用ELISA方法检测左肺肺泡灌洗液(BALF)中IL-1β、IL-6含量; 用实时荧光定量PCR测定小鼠右肺中叶有丝分裂原激活蛋白激酶激酶激酶8(MAP3K8)和肿瘤坏死因子α诱导蛋白3(TNFAIP3)基因表达水平。最终纳入GSE1871、GSE2411及GSE17355三个基因数据集, 筛选出60个差异基因。关键模块主要包括IL-6、IL-1β、MAP3K8、TNFAIP3等基因; GO生物学功能主要富集于炎症、免疫反应等; 细胞组分主要富集于细胞外; 分子功能主要是细胞因子活性。KEGG主要富集于TNF、Toll 样受体和NOD样受体信号通路等。smoke组和smoke + Dex组BALF中IL-1β、IL-6含量较对照组均明显升高(P均 < 0.05), smoke + Dex组较smoke组IL-1β、IL-6含量下降(P均 < 0.05)。与对照组比较, smoke组和smoke + Dex组TNFAIP3、MAP3K8基因表达水平明显上升(P均 < 0.05), 且smoke + Dex组较smoke组TNFAIP3基因表达水平上升(t = 5.701, P < 0.01), MAP3K8基因表达水平下降(t = 13.49, P < 0.01)。结果表明, SI-ALI小鼠肺组织炎症信号通路激活, IL-1β、IL-6分泌增加, MAP3K8及TNFAIP3基因表达量升高, 应用Dex可上调TNFAIP3、下调MAP3K8, IL-1β及IL-6分泌减少; Dex可能通过上调TNFAIP3抑制MAP3K8, 从而负调控TNF/MAPK信号通路来减轻SI-ALI的炎症反应。

关键词: 急性肺损伤, 烟雾, 地塞米松, 炎症反应, 生物信息学

Abstract:

To explore the protective effect of dexamethasone (Dex) on early inflammation in mice with smoke inhalation-induced acute lung injury (SI-ALI), we screened and analyzed bioinformatics gene chip data, followed by laboratory verification. The GEO database was used to search the ALI gene datasets, which were processed by the GEO2R online tool. The differential genes of each dataset were analyzed by Venn diagram to select the differential genes. A protein-protein interaction network was built on the String platform, and key protein modules were screened with Cytoscape software. The online databases DAVID and KOBAS were used for GO and KEGG enrichment analyses. A total of 45 C57BL/6 mice were randomly divided into three groups as follows: control group, smoke inhalation group (smoke group), and smoke inhalation + Dex group (smoke + Dex group), with 15 in each group. Inhalation of smoke for 10 min caused SI-ALI in the smoke group and smoke + Dex group, and the air was given in the control group. Dex (0.4 mg/100 g) was injected in the smoke + Dex group. Animals were sacrificed 24 h later, the bronchoalveolar lavage fluid (BALF) of the left lung was collected, and the levels of IL-1β and IL-6 were detected by ELISA. The expressions of mitogen-activated protein kinase kinase kinase 8 (MAP3K8) and tumor necrosis factor-alpha-induced protein 3 (TNFAIP3) in the right middle lobe were measured by real-time fluorescent quantitative PCR. GSE1871, GSE2411, and GSE17355 gene datasets were included, and 60 differential genes were selected. The key modules mainly included IL-6, IL-1β, MAP3K8, and TNFAIP3. The biological process of GO was mainly concentrated in inflammation, immune response, and so on. Cell components were mainly concentrated in extracellular and molecular functions. KEGG was mainly concentrated in TNF, Toll-like receptors, and NOD-like receptor signaling pathways. Compared with the control group, the levels of IL-1β and IL-6 in BALF in the smoke group and smoke + Dex group were significantly increased (all P < 0.05), and the levels of IL-1β and IL-6 in the smoke + Dex group were lower compared with the smoke group (all P < 0.05). Compared with the control group, the expressions of TNFAIP3 and MAP3K8 in the smoke group and smoke + Dex group were increased significantly (all P < 0.05), and the expression of TNFAIP3 in the smoke + Dex group was increased compared with the smoke group (t = 5.701, P < 0.01). Moreover, the expression of MAP3K8 was decreased (t = 13.49, P < 0.01). It could be concluded that inflammation signal pathways in lung tissues of SI-ALI mice were activated, the secretion of IL-1β and IL-6 was increased, and the expressions of MAP3K8 and TNFAIP3 were increased. Application of Dex could up-regulate TNFAIP3, down-regulate MAP3K8, and decrease the secretion of IL-1β and IL-6. Dex might inhibit MAP3K8 by up-regulating TNFAIP3, thereby negatively regulating the TNF/MAPK signaling pathway to reduce the inflammatory response of SI-ALI.

Key words: Acute lung injury, Smoke, Dexamethasone, Inflammatory response, Bioinformatics

Supporting: