[1] |
Ridgway, H.; Ntallis, C.; Chasapis, C.T.; Kelaidonis, K.; Matsoukas, M.T.; Plotas, P.; Apostolopoulos, V.; Moore, G.; Tsiodras, S.; Paraskevis, D.; Mavromoustakos, T.; Matsoukas, J.M. Molecular epidemiology of SARS-CoV-2: the dominant role of arginine in mutations and infectivity. Viruses. 2013, 15, 309.
|
[2] |
Alkhatib, M.; Salpini, R.; Carioti, L.; Ambrosio, F.A.; D’Anna, S.; Duca, L.; Costa, G.; Bellocchi, M.C.; Piermatteo, L.; Artese, A.; Santoro, M.M.; Alcaro, S.; Svicher, V.; Ceccherini-Silberstein, F. Update on SARS-CoV-2 omicron variant of concern and its peculiar mutational profile. Microbiol. Spectr. 2022, 10, e0273221.
|
[3] |
Ren, S.Y.; Wang, W.B.; Gao, R.D.; Zhou, A.M. Omicron variant (B.1.1.529) of SARS-CoV-2: Mutation, infectivity, transmission, and vaccine resistance. World J. Clin. Cases. 2022, 10, 1–11.
|
[4] |
Christensen, P.A.; Olsen, R.J.; Long, S.W.; Snehal, R.; Davis, J.J.; Ojeda Saavedra, M.; Reppond, K.; Shyer, M.N.; Cambric, J.; Gadd, R.; Thakur, R.M.; Batajoo, A.; Mangham, R.; Pena, S.; Trinh, T.; Kinskey, J.C.; Williams, G.; Olson, R.; Gollihar, J.; Musser, J.M. Signals of significantly increased vaccine breakthrough, decreased hospitalization rates, and less severe disease in patients with coronavirus disease 2019 caused by the omicron variant of severe acute respiratory syndrome coronavirus 2 in Houston, texas. Am. J. Pathol. 2022, 192, 642–652.
|
[5] |
Deng, X.D.; Wang, T.H.; Xiang, M.L.; Ke, J.L.; Gao, Q. Reflections on constructing a community of shared future between doctors and patients under the background that COVID-19 is classified as a Class B infectious disease. Modern Hospitals. 2023, 23, 772–775.
|
[6] |
Mo, Z.F. World Health Organization has declared that the coronavirus outbreak no longer constitutes a public health emergency of international concern. World Sci. 2023, 6, 52.
|
[7] |
Malone, B.; Urakova, N.; Snijder, E.J.; Campbell, E.A. Structures and functions of coronavirus replication–transcription complexes and their relevance for SARS-CoV-2 drug design. Nat. Rev. Mol. Cell Biol. 2022, 23, 21–39.
|
[8] |
Guigon, A.; Faure, E.; Lemaire, C.; Chopin, M.C.; Tinez, C.; Assaf, A.; Lazrek, M.; Hober, D.; Bocket, L.; Engelmann, I.; Alidjinou, E.K. Emergence of Q493R mutation in SARS-CoV-2 spike protein during bamlanivimab/etesevimab treatment and resistance to viral clearance. J. Infect. 2022, 84, 248–288.
|
[9] |
Mahase, E. Covid-19: Pfizer’s paxlovid is 89% effective in patients at risk of serious illness, company reports. BMJ. 2021, 375, n2713.
|
[10] |
Tao, K.M.; Tzou, P.; Nouhin, J.; Bonilla, H.; Jagannathan, P.; Shafer, R. SARS-CoV-2 antiviral therapy. Clin. Microbiol. Rev. 2021, 34, e0010921.
|
[11] |
Chavda, V.P.; Patel, A.B.; Vaghasiya, D.D. SARS-CoV-2 variants and vulnerability at the global level. J. Med. Virol. 2022, 94, 2986–3005.
|
[12] |
Ledford, H.; Maxmen, A. African clinical trial denied access to key COVID drug Paxlovid. Nature. 2022, 604, 412–413.
|
[13] |
Mohapatra, R.K.; Kandi, V.; Sarangi, A.K.; Verma, S.; Tuli, H.S.; Chakraborty, S.; Chakraborty, C.; Dhama, K. The recently emerged BA.4 and BA.5 lineages of Omicron and their global health concerns amid the ongoing wave of COVID-19 pandemic-Correspondence. Int. J. Surg. 2022, 103, 106698.
|
[14] |
Vangeel, L.; Chiu, W.; De Jonghe, S.; Maes, P.; Slechten, B.; Raymenants, J.; André, E.; Leyssen, P.; Neyts, J.; Jochmans, D. Remdesivir, Molnupiravir and Nirmatrelvir remain active against SARS-CoV-2 Omicron and other variants of concern. Antiviral Res. 2022, 198, 105252.
|
[15] |
Owen, D.R.; Allerton, C.M.N.; Anderson, A.S.; Aschenbrenner, L.; Avery, M.; Berritt, S.; Boras, B.; Cardin, R.D.; Carlo, A.; Coffman, K.J.; Dantonio, A.; Di, L.; Eng, H.; Ferre, R.; Gajiwala, K.S.; Gibson, S.A.; Greasley, S.E.; Hurst, B.L.; Kadar, E.P.; Kalgutkar, A.S.; Lee, J.C.; Lee, J.; Liu, W.; Mason, S.W.; Noell, S.; Novak, J.J.; Obach, R.S.; Ogilvie, K.; Patel, N.C.; Pettersson, M.; Rai, D.K.; Reese, M.R.; Sammons, M.F.; Sathish, J.G.; Singh, R.S.P.; Steppan, C.M.; Stewart, A.E.; Tuttle, J.B.; Updyke, L.; Verhoest, P.R.; Wei, L.; Yang, Q.; Zhu, Y. An oral SARS-CoV-2 Mpro inhibitor clinical candidate for the treatment of COVID-19. Science. 2021, 374, 1586–1593.
|
[16] |
Alugubelli, Y.R.; Geng, Z.Z.; Yang, K.S.; Shaabani, N.; Khatua, K.; Ma, X.R.; Vatansever, E.C.; Cho, C.C.; Ma, Y.; Xiao, J.; Blankenship, L.R.; Yu, G.; Sankaran, B.; Li, P.; Allen, R.; Ji, H.; Xu, S.; Liu, W.R. A systematic exploration of boceprevir-based main protease inhibitors as SARS-CoV-2 antivirals. Eur. J. Med. Chem. 2022, 240, 114596.
|
[17] |
National Health Commission, State Administration of Traditional Chinese Medicine. Diagnosis and treatment of COVID-19 (The ninth edition) [EB/OL]. (2022-03-14) [2022-03-15]. This article can be found online at https://www.gov.cn/zhengce/zhengceku/2022-03/15/content_5679257.htm.
|
[18] |
Sasaki, M.; Tabata, K.; Kishimoto, M.; Itakura, Y.; Kobayashi, H.; Ariizumi, T.; Uemura, K.; Toba, S.; Kusakabe, S.; Maruyama, Y.; Iida, S.; Nakajima, N.; Suzuki, T.; Yoshida, S.; Nobori, H.; Sanaki, T.; Kato, T.; Shishido, T.; Hall, W.W.; Orba, Y.; Sato, A.; Sawa, H. S-217622, a SARS-CoV-2 main protease inhibitor, decreases viral load and ameliorates COVID-19 severity in hamsters. Sci. Transl. Med. 2023, 15, eabq4064.
|
[19] |
Mukae, H.; Yotsuyanagi, H.; Ohmagari, N.; Doi, Y.; Imamura, T.; Sonoyama, T.; Fukuhara, T.; Ichihashi, G.; Sanaki, T.; Baba, K.; Takeda, Y.; Tsuge, Y.; Uehara, T. A randomized phase 2/3 study of ensitrelvir, a novel oral SARS-CoV-2 3C-like protease inhibitor, in Japanese patients with mild-to-moderate COVID-19 or asymptomatic SARS-CoV-2 infection: results of the phase 2a part. Antimicrob. Agents Chemother. 2022, 66, e0069722.
|
[20] |
Feng, X.; Guan, Q. Ensitrelvir, Xocova. Chin. J. Med. Chem. 2023, 33, 159.
|
[21] |
Lu, L.; Wu, Q.; Wang, F. XIANNUOXIN®: China’s first anti-SARS-CoV-2 drug targeting 3C-like protease. Progr. Pharmac. Sci. 2023, 47, 484–488.
|
[22] |
Cao, B.; Wang, Y.; Lu, H.; Huang, C.; Yang, Y.; Shang, L.; Chen, Z.; Jiang, R.; Liu, Y.; Lin, L.; Peng, P.; Wang, F.; Gong, F.; Hu, H.; Cheng, C.; Yao, X.; Ye, X.; Zhou, H.; Shen, Y.; Liu, C.; Wang, C.; Yi, Z.; Hu, B.; Xu, J.; Gu, X.; Shen, J.; Xu, Y.; Zhang, L.; Fan, J.; Tang, R.; Wang, C. Oral simnotrelvir for adult patients with mild-to-moderate covid-19. N. Engl. J. Med. 2024, 390, 230–241.
|
[23] |
Li, B.; Liu, C.W.; Li, Z.H.; Wang, L.; Jiang, W.H. Preparation and structural identification of the chiral isomers of SMA-1, the key starting material of leritrelvir. Chin. J. Med. Chem. 2023, 33, 904–909.
|
[24] |
Ding, Y.H.; Liu, L. Phase I study, and dosing regimen selection for a pivotal COVID-19 trial of GST-HG171. Antimicrob. Agents Chemother. 2024, 68, e0111523.
|
[25] |
Zhang, J.L.; Li, Y.H.; Wang, L.L.; Liu, H.Q.; Lu, S.Y.; Liu, Y.; Li, K.; Liu, B.; Li, S.Y.; Shao, F.M.; Wang, K.; Sheng, N.; Li, R.; Cui, J.J.; Sun, P.C.; Ma, C.X.; Zhu, B.; Wang, Z.; Wan, Y.H.; Yu, S.S.; Che, Y.S.; Wang, C.Y.; Wang, C.; Zhang, Q.Q.; Zhao, L.M.; Peng, X.Z.; Cheng, Z.S.; Chang, J.B.; Jiang, J.D. Azvudine is a thymus-homing anti-SARS-CoV-2 drug effective in treating COVID-19 patients. Signal Transduct. Target. Ther. 2021, 6, 414.
|
[26] |
Pourkarim, F.; Pourtaghi-Anvarian, S.; Rezaee, H. Molnupiravir: a new candidate for COVID-19 treatment. Pharmacol. Res. Perspect. 2022, 10, e00909.
|
[27] |
Fischer, W.A.; Eron, J.J.; Holman, W.; Cohen, M.S.; Fang, L.; Szewczyk, L.J.; Sheahan, T.P.; Baric, R.; Mollan, K.R.; Wolfe, C.R.; Duke, E.R.; Azizad, M.M.; Borroto-Esoda, K.; Wohl, D.A.; Coombs, R.W.; James Loftis, A.; Alabanza, P.; Lipansky, F.; Painter, W.P. A phase 2a clinical trial of molnupiravir in patients with COVID-19 shows accelerated SARS-CoV-2 RNA clearance and elimination of infectious virus. Sci. Transl. Med. 2022, 14, eabl7430.
|
[28] |
Ren, Z.G.; Luo, H.; Yu, Z.J.; Song, J.C.; Liang, L.; Wang, L.; Wang, H.Y.; Cui, G.Y.; Liu, Y.; Wang, J.; Li, Q.Q.; Zeng, Z.H.; Yang, S.K.; Pei, G.Z.; Zhu, Y.H.; Song, W.B.; Yu, W.Q.; Song, C.J.; Dong, L.H.; Hu, C.S.; Du, J.F.; Chang, J.B. A randomized, open-label, controlled clinical trial of azvudine tablets in the treatment of mild and common COVID-19, a pilot study. Adv. Sci. 2020, 7, e2001435.
|
[29] |
Shen, Y.Z.; Ai, J.W.; Lin, N.; Zhang, H.C.; Li, Y.; Wang, H.Y.; Wang, S.; Wang, Z.; Li, T.; Sun, F.; Fan, Z.Y.; Li, L.Q.; Lu, Y.F.; Meng, X.M.; Xiao, H.; Hu, H.L.; Ling, Y.; Li, F.; Li, H.D.; Xi, C.M.; Gu, L.P.; Zhang, W.H.; Fan, X.H. An open, prospective cohort study of VV116 in Chinese participants infected with SARS-CoV-2 omicron variants. Emerg. Microbes Infect. 2022, 11, 1518–1523.
|
[30] |
McCarthy, M.W. VV116 as a potential treatment for COVID-19. Expert. Opin Pharmacother. 2023, 24, 675–678.
|
[31] |
Fan, X.; Dai, X.; Ling, Y.; Wu, L.; Tang, L.; Peng, C.; Huang, C.; Liu, H.; Lu, H.; Shen, X.; Zhang, W.; Wang, F.; Li, G.; Li, M.; Huang, Y.; Zhang, H.; Li, M.; Ren, F.; Li, Y.; Liu, C.; Zhou, Z.; Sun, W.; Yi, Y.; Zhou, D.; Gao, H.; Pan, Q.; Liu, H.; Zhao, J.; Ding, Z.; Ma, Y.; Li, W.; Wang, Q.; Wang, X.; Bai, Y.; Jiang, X.; Ma, J.; Xie, B.; Zhang, K.; Li, L. Oral VV116 versus placebo in patients with mild-to-moderate COVID-19 in China: a multicentre, double-blind, phase 3, randomised controlled study. Lancet Infect. Dis. 2024, 24, 129–139.
|
[32] |
Feng, X.; Guan, Q. Renmindevir. Chin. J. Med. Chem. 2023, 33, 160.
|
[33] |
Chatterjee, S.; Bhattacharya, M.; Nag, S.; Dhama, K.; Chakraborty, C. A detailed overview of SARS-CoV-2 omicron: its sub-variants, mutations and pathophysiology, clinical characteristics, immunological landscape, immune escape, and therapies. Viruses. 2023, 15, 167.
|