[1] |
World Health Organization. Global Hepatitis Report; World Health Organization: Geneva, Switzerland, 2017.
|
[2] |
Polaris Observatory HCV Collaborators. Global prevalence and genotype distribution of hepatitis C virus infection in 2015: a modelling study. Lancet Gastroenterol Hepatol. 2017, 2, 161–176.
|
[3] |
Zhang, Y.; Chen, L.M.; He, M. Hepatitis C Virus in mainland China with an emphasis on genotype and subtype distribution. Virol. J. 2017, 14, 41.
|
[4] |
Bertino, G.; Ardiri, A.; Proiti, M.; Rigano, G.; Frazzetto, E.; Demma, S.; Ruggeri, M.I.; Scuderi, L.; Malaguarnera, G.; Bertino, N.; Rapisarda, V.; Di Carlo, I.; Toro, A.; Salomone, F.; Malaguarnera, M.; Bertino, E.; Malaguarnera, M. Chronic hepatitis C: This and the new era of treatment. World J. Hepatol. 2016, 8, 92–106.
|
[5] |
Lontok, E.; Harrington, P.; Howe, A.; Kieffer, T.; Lennerstrand, J.; Lenz, O.; McPhee, F.; Mo, H.M.; Parkin, N.; Pilot-Matias, T.; Miller, V. Hepatitis C virus drug resistance-associated substitutions: State of the art summary. Hepatology. 2015, 62, 1623–1632.
|
[6] |
Sorbo, M.C.; Cento, V.; di Maio, V.C.; Howe, A.Y.M.; Garcia, F.; Perno, C.F.; Ceccherini-Silberstein, F. Hepatitis C virus drug resistance associated substitutions and their clinical relevance: Update 2018. Drug Resist. Updat. 2018, 37, 17–39.
|
[7] |
Krishnan, P.; Pilot-Matias, T.; Schnell, G.; Tripathi, R.; Ng, T.I.; Reisch, T.; Beyer, J.; Dekhtyar, T.; Irvin, M.; Xie, W.G.; Larsen, L.; Mensa, F.J.; Collins, C. Pooled resistance analysis in patients with hepatitis C virus genotype 1 to 6 infection treated with glecaprevir-pibrentasvir in phase 2 and 3 clinical trials. Antimicrob. Agents Chemother. 2018, 62, e01249–18.
|
[8] |
Li, Z.; Chen, Z.W.; Li, H.; Ren, H.; Hu, P. Prevalence of hepatitis C virus-resistant association substitutions to direct-acting antiviral agents in treatment-naïve hepatitis C genotype 1b-infected patients in Western China. Infect. Drug Resist. 2017, 10, 377–392.
|
[9] |
Pawlotsky, J.M. Hepatitis C virus resistance to direct-acting antiviral drugs in interferon-free regimens. Gastroenterology. 2016, 151, 70–86.
|
[10] |
Kumada, H.; Suzuki, Y.; Ikeda, K.; Toyota, J.; Karino, Y.; Chayama, K.; Kawakami, Y.; Ido, A.; Yamamoto, K.; Takaguchi, K.; Izumi, N.; Koike, K.; Takehara, T.; Kawada, N.; Sata, M.; Miyagoshi, H.; Eley, T.; McPhee, F.; Damokosh, A.; Ishikawa, H.; Hughes, E. Daclatasvir plus asunaprevir for chronic HCV genotype 1b infection. Hepatology. 2014, 59, 2083–2091.
|
[11] |
Komatsu, T.E.; Boyd, S.; Sherwat, A.; Tracy, L.; Naeger, L.K.; O’Rear, J.J.; Harrington, P.R. Regulatory analysis of effects of hepatitis C virus NS5A polymorphisms on efficacy of elbasvir and grazoprevir. Gastroenterology. 2017, 152, 586–597.
|
[12] |
Zeuzem, S.; Mizokami, M.; Pianko, S.; Mangia, A.; Han, K.H.; Martin, R.; Svarovskaia, E.; Dvory-Sobol, H.; Doehle, B.; Hedskog, C.; Yun, C.; Brainard, D.M.; Knox, S.; McHutchison, J.G.; Miller, M.D.; Mo, H.M.; Chuang, W.L.; Jacobson, I.; Dore, G.J.; Sulkowski, M. NS5A resistance-associated substitutions in patients with genotype 1 hepatitis C virus: Prevalence and effect on treatment outcome. J. Hepatol. 2017, 66, 910–918.
|
[13] |
Harrington, P.R.; Komatsu, T.E.; Deming, D.J.; Donaldson, E.F.; O'Rear, J.J.; Naeger, L.K. Impact of hepatitis C virus polymorphisms on direct-acting antiviral treatment efficacy: Regulatory analyses and perspectives. Hepatology. 2018, 67, 2430–2448.
|
[14] |
Krishnan, P.; Beyer, J.; Mistry, N.; Koev, G.; Reisch, T.; DeGoey, D.; Kati, W.; Campbell, A.; Williams, L.; Xie, W.G.; Setze, C.; Molla, A.; Collins, C.; Pilot-Matias, T. In vitro andIn VivoAntiviral activity and resistance profile of ombitasvir, an inhibitor of hepatitis C virus NS5A. Antimicrob. Agents Chemother. 2015, 59, 979–987.
|
[15] |
Wong, K.A.; Worth, A.; Martin, R.; Svarovskaia, E.; Brainard, D.M.; Lawitz, E.; Miller, M.D.; Mo, H.M. Characterization of hepatitis C virus resistance from a multiple-dose clinical trial of the novel NS5A inhibitor GS-5885. Antimicrob. Agents Chemother. 2013, 57, 6333–6340.
|
[16] |
Liu, R.; Curry, S.; McMonagle, P.; Yeh, W.W.; Ludmerer, S.W.; Jumes, P.A.; Marshall, W.L.; Kong, S.; Ingravallo, P.; Black, S.; Pak, I.; DiNubile, M.J.; Howe, A.Y.M. Susceptibilities of genotype 1a, 1b, and 3 hepatitis C virus variants to the NS5A inhibitor elbasvir. Antimicrob. Agents Chemother. 2015, 59, 6922–6929.
|
[17] |
Lawitz, E.J.; Dvory-Sobol, H.; Doehle, B.P.; Worth, A.S.; McNally, J.; Brainard, D.M.; Link, J.O.; Miller, M.D.; Mo, H.M. Clinical resistance to velpatasvir (GS-5816), a novel pan-genotypic inhibitor of the hepatitis C virus NS5A protein. Antimicrob. Agents Chemother. 2016, 60, 5368–5378.
|
[18] |
Fridell, R.A.; Wang, C.F.; Sun, J.H.; O’Boyle, D.R. II, Nower, P.; Valera, L.; Qiu, D.K.; Roberts, S.; Huang, X.; Kienzle, B.; Bifano, M.; Nettles, R.E.; Gao, M. Genotypic and phenotypic analysis of variants resistant to hepatitis C virus nonstructural protein 5A replication complex inhibitor BMS-790052 in Humans: In Vitro and In Vivo Correlations. Hepatology. 2011, 54, 1924–1935.
|
[19] |
Takeda, H.; Ueda, Y.; Inuzuka, T.; Yamashita, Y.; Osaki, Y.; Nasu, A.; Umeda, M.; Takemura, R.; Seno, H.; Sekine, A.; Marusawa, H. Evolution of multi-drug resistant HCV clones from pre-existing resistant-associated variants during direct-acting antiviral therapy determined by third-generation sequencing. Sci. Rep. 2017, 7, 45605.
|
[20] |
Ng, T.; Pilot-Matias, T.; Tripathi, R.; Schnell, G.; Krishnan, P.; Reisch, T.; Beyer, J.; Dekhtyar, T.; Irvin, M.; Lu, L.J.; Asatryan, A.; Campbell, A.; Yao, B.; Lovell, S.; Mensa, F.; Lawitz, E.; Kort, J.; Collins, C. Resistance analysis of a 3-day monotherapy study with glecaprevir or pibrentasvir in patients with chronic hepatitis C virus genotype 1 infection. Viruses. 2018, 10, 462.
|
[21] |
Krishnan, P.; Schnell, G.; Tripathi, R.; Beyer, J.; Reisch, T.; Dekhtyar, T.; Irvin, M.; Xie, W.G.; Fu, B.; Burroughs, M.; Redman, R.; Kumada, H.; Chayama, K.; Collins, C.; Pilot-Matias, T. Integrated resistance analysis of CERTAIN-1 and CERTAIN-2 studies in hepatitis C virus-infected patients receiving glecaprevir and pibrentasvir in Japan. Antimicrob. Agents Chemother. 2018, 62, e02217–17.
|
[22] |
Degasperi, E.; Spinetti, A.; Lombardi, A.; Landonio, S.; Rossi, M.C.; Pasulo, L.; Pozzoni, P.; Giorgini, A.; Fabris, P.; Romano, A.; Lomonaco, L.; Puoti, M.; Vinci, M.; Gatti, F.; Carolo, G.; Zoncada, A.; Bonfanti, P.; Russo, F.P.; Aghemo, A.; Soria, A.; Centenaro, R.; Maggiolo, F.; Rovere, P.; Pasin, F.; Paon, V.; Faggiano, G.; Vario, A.; Grossi, G.; Soffredini, R.; Carriero, C.; Paolucci, S.; Noventa, F.; Alberti, A.; Lampertico, P.; Fagiuoli, S. Real-life effectiveness and safety of sofosbuvir/velpatasvir/voxilaprevir in hepatitis C patients with previous DAA failure. J. Hepatol. 2019, 71, 1106–1115.
|
[23] |
Lawitz, E.J.; O'Riordan, W.D.; Asatryan, A.; Freilich, B.L.; Box, T.D.; Overcash, J.S.; Lovell, S.; Ng, T.I.; Liu, W.; Campbell, A.; Lin, C.W.; Yao, B.; Kort, J. Potent antiviral activities of the direct-acting antivirals ABT-493 and ABT-530 with three-day monotherapy for hepatitis C virus genotype 1 infection. Antimicrob. Agents Chemother. 2016, 60, 1546–1555.
|
[24] |
Combet, C.; Garnier, N.; Charavay, C.; Grando, D.; Crisan, D.; Lopez, J.; Dehne-Garcia, A.; Geourjon, C.; Bettler, E.; Hulo, C.; Mercier, P.L.; Bartenschlager, R.; Diepolder, H.; Moradpour, D.; Pawlotsky, J.M.; Rice, C.M.; Trepo, C.; Penin, F.; Deleage, G. euHCVdb: the European hepatitis C virus database. Nucleic Acids Res. 2007, 35, D363–D366.
|
[25] |
Kuiken, C.; Hraber, P.; Thurmond, J.; Yusim, K. The hepatitis C sequence database in Los Alamos. Nucleic Acids Res. 2007, 36, D512–D516.
|
[26] |
Pickett, B.; Greer, D.; Zhang, Y.; Stewart, L.; Zhou, L.W.; Sun, G.Y.; Gu, Z.P.; Kumar, S.; Zaremba, S.; Larsen, C.; Jen, W.; Klem, E.; Scheuermann, R. Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. Viruses. 2012, 4, 3209–3226.
|
[27] |
Hedskog, C.; Dvory-Sobol, H.; Gontcharova, V.; Martin, R.; Ouyang, W.; Han, B.; Gane, E.J.; Brainard, D.; Hyland, R.H.; Miller, M.D.; Mo, H.; Svarovskaia, E. Evolution of the HCV viral population from a patient with S282T detected at relapse after sofosbuvir monotherapy. J. Viral Hepat. 2015, 22, 871–881.
|
[28] |
Wei, L.; Omata, M.; Lim, Y.S.; Xie, Q.; Hou, J.L.; Jia, J.D.; Hedskog, C.; Martin, R.; Doehle, B.; Yang, J.; De-Oertel, S.; Massetto, B.; Kersey, K.; Brainard, D.M.; Svarovskaia, E.; Mo, H.M.; Han, K.H.; Mizokami, M.; Duan, Z.P. HCV phylogenetic signature and prevalence of pretreatment NS5A and NS5B NI-Resistance associated substitutions in HCV-Infected patients in Mainland China. Antivir. Res. 2018, 158, 178–184.
|
[29] |
Wang, Y.; Rao, H.Y.; Xie, X.W.; Wei, L. Direct-acting antiviral agents resistance-associated polymorphisms in Chinese treatment-naïve patients infected with genotype 1b hepatitis C virus. Chin. Med. J. 2015, 128, 2625–2631.
|
[30] |
Jacobson, I.; Asante-Appiah, E.; Wong, P. Prevalence and impact of baseline NS5A resistance associated variants (RASs) on the efficacy of elbasvir/grazoprevir (EBR/GZR) against GT1a infection (abstr). Hepatology. 2015, 62, 1393A.
|
[31] |
Fridell, R.A.; Qiu, D.K.; Wang, C.F.; Valera, L.; Gao, M. Resistance analysis of the hepatitis C virus NS5A inhibitor BMS-790052 in an in vitro replicon system. Antimicrob. Agents Chemother. 2010, 54, 3641–3650.
|
[32] |
Pelosi, L.A.; Voss, S.; Liu, M.P.; Gao, M.; Lemm, J.A. Effect on hepatitis C virus replication of combinations of direct-acting antivirals, including NS5A inhibitor daclatasvir. Antimicrob. Agents Chemother. 2012, 56, 5230–5239.
|
[33] |
Patiño-Galindo, J.Á.; Salvatierra, K.; González-Candelas, F.; López-Labrador, F.X. Comprehensive screening for naturally occurring hepatitis C virus resistance to direct-acting antivirals in the NS3, NS5A, and NS5B genes in worldwide isolates of viral genotypes 1 to 6. Antimicrob. Agents Chemother. 2016, 60, 2402–2416.
|
[34] |
Sarrazin, C.; Zeuzem, S. Resistance to direct antiviral agents in patients with hepatitis C virus infection. Gastroenterology. 2010, 138, 447–462.
|